Question: Getting TaxID from local BLAST run
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gravatar for irritable_phd_syndrom
4.3 years ago by
irritable_phd_syndrom70 wrote:

I am hosting a local blast server and I am blastxing against the nr database.  I was wondering how to get the taxonomic IDs from blastx in that case?  Thanks.

rna-seq blast • 2.5k views
ADD COMMENTlink modified 4.3 years ago by Jon330 • written 4.3 years ago by irritable_phd_syndrom70
blastx -help
ADD REPLYlink modified 3 months ago by RamRS26k • written 4.3 years ago by 5heikki8.7k
1
gravatar for Jon
4.3 years ago by
Jon330
United States - US FS
Jon330 wrote:

You should look at this post: Scientific Names In Blast Output And Databases. If it is command line, you should just need to use the -staxids

ADD COMMENTlink modified 3 months ago by RamRS26k • written 4.3 years ago by Jon330
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