I was wondering if someone already succeded to do some PAML (Dn/Ds) / branch site tests using multicore computers. I normally use http://www.parallelpython.com/
But the problem is that the CODEML programme creates some temporary files in the folder where is located, so I can't run more than one at a time. It may be possible to change the working path every time we run a CODEML copy?
Any help will be welcome :)