Question: Calculating relative abundances of bactria in healthy human gut from 16s reads
1
gravatar for Nari
4.6 years ago by
Nari880
United States
Nari880 wrote:

Does anyone aware of exact relative abundances of all bacteria in human gut from HMP - Human Microbiome Project on healthy samples. I searched the hmp-dacc, I only found out the metagenomes of the sample but relative abundances of each sample are not available. Should I calculate from the 16s reads but that seems lengthy.

It will be awesome if I could get precalculated one. 

if not available :

How to calculate relative abundances from 16s reads?

16srrna bacteria latest • 1.7k views
ADD COMMENTlink modified 3.8 years ago by lotus2870 • written 4.6 years ago by Nari880
1
gravatar for lotus28
3.8 years ago by
lotus2870
lotus2870 wrote:

I think you should inspect this page. It contains an overview of all databases within HMP

More specifically, you can see there are links to "Shotgun community profiling (HMSCP)" project and "Mothur community profiling (HMMCP)" and "QIIME community profiling (HMQCP)" 16S projects.

I think these are the DBs you need

ADD COMMENTlink written 3.8 years ago by lotus2870
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 909 users visited in the last hour