Question: How to generate a heatmap of a complex (three transcription factors)
1
gravatar for Sam
3.4 years ago by
Sam70
United States
Sam70 wrote:

Is there a way to generate a heatmap of a complex of transcription factors (in more detail, I am trying to generate a heatmap of the 7SK snRNP which is composed of Hexim, Larp7, and Cdk9) at the TSS. I can easily generate individual heatmaps for each of the separate TF's themselves using ngsplot or deepTools, but I was wondering if there was a way to combine all three into a single heatmap?

I also have some experience with R and Bioconductor so any packages can also be submitted as answers.

 

Thanks in advance,

ADD COMMENTlink modified 3.4 years ago by Devon Ryan90k • written 3.4 years ago by Sam70
1
gravatar for Devon Ryan
3.4 years ago by
Devon Ryan90k
Freiburg, Germany
Devon Ryan90k wrote:

Just use the "release-1.6" branch of deepTools, you can then include multiple samples in a heatmap (or profile plot).

ADD COMMENTlink written 3.4 years ago by Devon Ryan90k
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