Question: What whole genome aligners are designed to work with contigs, not short reads, as an input?
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gravatar for usgenome2018
4.1 years ago by
usgenome201830
USA
usgenome201830 wrote:

What whole genome aligners are designed to work with contigs, not short reads, as an input?

sequencing sequence alignment • 1.1k views
ADD COMMENTlink modified 4.1 years ago by guillaume.gautreau44140 • written 4.1 years ago by usgenome201830
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gravatar for guillaume.gautreau44
4.1 years ago by
France
guillaume.gautreau44140 wrote:

MUMmer http://mummer.sourceforge.net/

ADD COMMENTlink written 4.1 years ago by guillaume.gautreau44140
1
gravatar for Pierre Lindenbaum
4.1 years ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum125k wrote:
LAST: genome-scale sequence comparison  http://last.cbrc.jp/ 
ADD COMMENTlink written 4.1 years ago by Pierre Lindenbaum125k
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