I want to use GO enrichment (http://geneontology.org/) for the first time with my E.coli proteomic hits. My IDs are from Uniprot and I have 211 of these. After submitting my 211 IDs, only 4 are mapped.
The 4 IDs that mapped successfully are:
P39356 P0A8A0 P0AAB8 P0AAI3
Here is a sample list of IDs that didn't match:
P0A954 A0A061KCV1 P0AGK6 A0A066SYL5
I have also tried to convert the Uniprot IDs to Uniprot Gene names and then searching it on GO, which has given me an improved number of mapped IDs to 129 out of 211.
A sample of hits which was mapped successfully includes:
ampC accA yeaG atpF
Here are a sample of Gene names which was not mapped successfully:
bla groL1 hlyA AC789_1c11180 BY96_12590
If someone can shed some light on why it is not mapping successfully that will be great. Thanks.
The list of IDs I want submitting are located here