Question: Memory requirement for the transcriptome data analysis from ion PGM
gravatar for iamtuttu5
4.5 years ago by
United States
iamtuttu540 wrote:

hello all


I am doing plant transcriptome data analysis . sequencing was done using ion PGM , i got 23 million single end reads and 24 million single end reads  for two biological replicates . i am planning to move with denovo transcriptome assembly

can any one please help me by suggesting the minimum RAM requirment for the assembly of these sample data.


Thank you

assembly denovo rna-seq ion pgm • 1.2k views
ADD COMMENTlink written 4.5 years ago by iamtuttu540

In general memory use for any computational task depends on the algorithm and its particular implementation details. So check the requirements and guidelines for the assembler you want to use.

ADD REPLYlink written 4.5 years ago by Jean-Karim Heriche22k
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