Is it advisable to include or use Fragment DNA/Protein sequences in alignment and further analysis for Publication?

Question

[otarighobenson152799]

Hi everyone, I am new in the field of bioinformatics, though after attending some bioinformatics course training, I find it so interesting. So, I am trying to do some sequence alignment but I need a professional advice. Is it advisable to include or use Fragment DNA/Protein sequences in alignment and further analysis for Publication? Thanks.

[Devon Ryan]

Depends on the type of sequencing, species, goal, etc.

[otarighobenson152799]

Thank you so much. The organisms in question are freshwater snails and the purpose is to have a phylogenetic analysis.

[otarighobenson152799]

Thank you so much. The organisms in question are freshwater snails and the purpose is to have a phylogenetic analysis. Please, what do you advice?