Question: CNVnator installation error
gravatar for xiaoyonf
3.9 years ago by
Baylor College of Medicine, Houston, Texas, USA
xiaoyonf10 wrote:

Hi, I tried to install the CNVnator in MAC v10.10.5 terminal.  I followed the procedures by searching online instruction in ROOTSYS setup.  I have the final step showing the error message as below,

xiaoyongs-mbp:src MyBioinformatics$ make

g++ -m64 -DCNVNATOR_VERSION=\"v0.3\" -I/include -Isamtools -c cnvnator.cpp -o obj/cnvnator.o

In file included from cnvnator.cpp:8:

./HisMaker.hh:11:10: fatal error: 'TFrame.h' file not found

#include <TFrame.h>


1 error generated.

make: *** [obj/cnvnator.o] Error 1

Does anyone have the same experience when installing the CNVnator?  What is the TFrame.h file and how to fix it?

Thank you very much!


myposts software error • 3.5k views
ADD COMMENTlink modified 3.9 years ago by donfreed1.5k • written 3.9 years ago by xiaoyonf10

Hi xiaoyonf.

If you install speedseq, you can get CNVnator installed very easily.


ADD REPLYlink written 3.9 years ago by Leandro Lima930
gravatar for donfreed
3.9 years ago by
Mountain View, CA
donfreed1.5k wrote:

The compiler can not find all of the files it needs to compile CNVnator because your environment is not correctly set. Specifically, you need to set the LD_LIBRARY_PATH and ROOTSYS variables.

See these links for additional help:

ADD COMMENTlink written 3.9 years ago by donfreed1.5k


I followed the above links and installed root but could not install CNVnator. I tried but i am end up with follow error..

In file included from cnvnator.cpp:8:0: HisMaker.hh:11:20: fatal error: TFrame.h: No such file or directory #include <tframe.h> ^ compilation terminated. make: * [obj/cnvnator.o] Error 1

I think am doing mistake somewhere while setting the path. export ROOTSYS=/usr/include/root/ export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${ROOTSYS}/lib.. please help me to install CNVnator

ADD REPLYlink written 3.3 years ago by sukesh141130
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