Entering edit mode
7.4 years ago
dina.hesham139 ▴ 160
I mapped my fastq files using STAR. The output now is a sorted bam files. I wanted to try Stringtie instead of cufflinks.
But since my output doesn't contain the tag XS, Can Stringtie deal with it ?
Thank you a lot!!
Okay. What if I already mapped without this option, can I still use Stringtie?
From StringTie Manual page -
So, you would need to redo if you want to use StringTie or Cufflinks.