Question: Differential Network Analysis
0
gravatar for pixie@bioinfo
3.3 years ago by
pixie@bioinfo1.4k
pixie@bioinfo1.4k wrote:

I have two sets of co-expression network, set 1 and 2. Set 1 has been built by combining a number of different microarray datasets corresponding to one developmental process. Similarly, set 2 has been constructed by meta-analysis of a different set of microarray studies corresponding to another developmental process. I want to find the commonalities and differences (which are only due to the developmental processes) in the two network. Any idea/ tool/algorithm or paper reference will be greatly appreciated.

Thanks.

network • 1.1k views
ADD COMMENTlink modified 3.3 years ago by Jean-Karim Heriche18k • written 3.3 years ago by pixie@bioinfo1.4k
1
gravatar for Jean-Karim Heriche
3.3 years ago by
EMBL Heidelberg, Germany
Jean-Karim Heriche18k wrote:

It depends on what you're looking for. My guess is that you're looking for what's called graph/network alignment. See this omictools page for a list of algorithms.

ADD COMMENTlink written 3.3 years ago by Jean-Karim Heriche18k

Thanks, I will have a look.

ADD REPLYlink written 3.3 years ago by pixie@bioinfo1.4k
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