HM450k probes portrayed on chromosomes

0

Entering edit mode

8.3 years ago

floris.barthel ▴ 50

Hi,

I'm looking for a figure that portrays the position of HM450k probes across on top of chromosomes. Anyone know where I can find something like this?

Floris

human methylation 450k methylation DNA methylation • 1.7k views

ADD COMMENT • link updated 8.3 years ago by easelpeasel ▴ 10 • written 8.3 years ago by floris.barthel ▴ 50

1

Entering edit mode

Hi,

do you mean an ideogram? Similar to some examples on this website?

http://visualization.ritchielab.psu.edu/phenograms/examples

cheers,

Stephan

ADD REPLY • link 8.3 years ago by easelpeasel ▴ 10

0

Entering edit mode

Thanks, this is what I was looking for

ADD REPLY • link 8.2 years ago by floris.barthel ▴ 50

0

Entering edit mode

Have you thought about just making one? You can download the probe annotations, convert them to a BED file and load that into IGV, which can save images.

ADD REPLY • link 8.3 years ago by Devon Ryan 104k

0

Entering edit mode

You don't want to plot all 450000 positions in a single figure, do you?

ADD REPLY • link updated 4.3 years ago by Ram 43k • written 8.3 years ago by dario.garvan ▴ 530

Login before adding your answer.