Question: microarray meta- analysis
0
gravatar for vahideh
4.1 years ago by
vahideh20
Iran
vahideh20 wrote:

Hi everyone!

How can I apply meta- analysis manner in R for several GSE?

Please, Introduce me about microarray meta- analysis in R such as practical example, tutorial and etc.

Thank you!

microarray R meta- analysis • 2.3k views
ADD COMMENTlink modified 3.6 years ago by alexvpickering40 • written 4.1 years ago by vahideh20
3
gravatar for alexvpickering
3.6 years ago by
alexvpickering40 wrote:

I recently released the R package crossmeta on Bioconductor which streamlines the cross-platform and cross-species meta-analysis of microarray data. All you need is a list of GSEs for which you would like to perform a meta-analysis. crossmeta automates downloading, pre-processing, annotating, and batch variable correction of raw data from GEO. You can check out the vignette for usage details. I also have a couple of posts on my blog that evaluate crossmeta and demonstrate the type of analysis that is possible.

Good luck!

ADD COMMENTlink modified 3.6 years ago • written 3.6 years ago by alexvpickering40
1
gravatar for Amitm
4.1 years ago by
Amitm1.9k
UK
Amitm1.9k wrote:

hi,

This should get you started -

Analysing Microarray Data In Bioconductor

ADD COMMENTlink written 4.1 years ago by Amitm1.9k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 804 users visited in the last hour