Question: How to find chromosome coordinates based on gene locus
0
gravatar for sayaneshome.rsg
3.7 years ago by
sayaneshome.rsg0 wrote:

I have full file comprising of list of gene locus.How can I find corresponding chromosome coordinates for each entry ?Is there any program or command(for example,using ncbi utilities) for the task ?

For example,I have following data :

locus
AT1G01073
AT1G01115
AT1G01471
AT1G02320
AT1G02350
AT1G02391
AT1G02490
AT1G03022
AT1G03106
AT1G03200
AT1G03240
AT1G04171
AT1G04501

I need to find chromosome coordinates for all of them.

 

 

 

 

 

locus gene ncbi genome • 2.6k views
ADD COMMENTlink modified 3.7 years ago by satanicodr120 • written 3.7 years ago by sayaneshome.rsg0
2
gravatar for satanicodr
3.7 years ago by
satanicodr120
satanicodr120 wrote:

Go to

http://www.ncbi.nlm.nih.gov/genome/proteins/4?genome_assembly_id=22492&gi=240254421

And look for the genes or download the annotation tables for all the chromosomes and then do a search on them, 

 

 

ADD COMMENTlink written 3.7 years ago by satanicodr120
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