Pipeline for miRNA expression analysis

Question

[silas008]

Hello,

Do you know a basic pipeline for mirna expression analysis?

I am doing:

1-processing using fastx tool kit

2-mapping using bowtie2

3-.bam, sorted.bam and sorted.bam.bai using picard tools

4-mirna count using bed tools

Are there a basic protocol published to compare with my pipeline?

Thank you