I am looking for data which contains somatic allele frequency obtains from many tumors.
For example, something like:
chromosome pos ref alt AF
Using TCGA website, it seems they only provide data per sample. Any Idea where I can find this data?
I want to get data for non-coding DNA, from any location in the genome
It seems it's exactly what I need !
And is there a way to download all data for the complete human genom ?
Because it seems, I can download data only for defined genes. What about non coding dna ?
Ok, cBioPortal is greate! But I want the same data for non-coding dna! That's mean, I give a location and I get the AF in the same way that for coding genes.
I have posted answer in case you want (Somatic) mut. that are affecting non-protein coding region of the transcriptome.