Question: How can I calcualte the sequence identity and coverage form GMAP output bam file?
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gravatar for 52Teth
3.3 years ago by
52Teth30
52Teth30 wrote:

Now I have got a bam file from gmap alignment with data from RNA sequencing. Now I want to get the statistic information about the coverage and identity of every sequence. So is there any tools that can deal with this?Or How can I compute the identity and coverage form sam file?
Thanks a lot for any reply!

ADD COMMENTlink modified 18 months ago by Biostar ♦♦ 20 • written 3.3 years ago by 52Teth30

Cross-posted

ADD REPLYlink written 3.3 years ago by Brian Bushnell16k
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