Obtaining fastPHASE tool
3
0
Entering edit mode
5.5 years ago
kshitijtayal ▴ 40

Over the year PHASE tool has been considered as a gold standard for Haplotype inference. But the problem with the tool is that it is very slow to work it. They developed another tool called fastPHASE which is supposed to be fast as compared to PHASE tool. But unfortunately it is nowhere available in public domain. 

Strictly speaking fastPHASE should be available in this link

https://els.comotion.uw.edu/express_license_technologies/fastphase

http://www.mybiosoftware.com/fastphase-1-4-0-haplotype-reconstruction-estimating-missing-genotypes.html

Does anybody in this community posses fastPHASE software or point me out to the link or repository where i can find it ?

haplotype PHASE next-gen • 2.3k views
ADD COMMENT
1
Entering edit mode
5.3 years ago
Fabio Marroni ★ 2.7k

You have to write an email to the licensing body. The email address is in the page: license@uw.edu You tell them that you want fastPHASE and you are willing to sign the license agreement. If you work in a no-profit organization then it's free for you, and they do all very quickly. I did it a lot of time ago, but I remember it was quick. I should still have fastPHASE somewhere, but I am not able to find it at the moment.

However, would you like to try Beagle? I currently prefer beagle over fastPHASE.

ADD COMMENT
1
Entering edit mode
3.9 years ago

The fastPHASE software is available at the Paul Scheet Lab website, rubric Programs.

ADD COMMENT
0
Entering edit mode
5.3 years ago
xgdong912 ▴ 10

Did you find the software finally?I have the same problem

ADD COMMENT

Login before adding your answer.

Traffic: 1467 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6