I want a consolidated MAF file for all cancers from TCGA data.
Is it correct to use the MAF search tool: https://tcga-data.nci.nih.gov/search/#/
Click all in the left side panel and create and custom maf download and use it?
I see a list of files they have chosen for the tool is from all cancers and similar files are being used by broad at firehose and TCGA Pancancer analysis.
But I am surprised that I never across in any of the TCGA MAF discussions in this forum about the topic of 'custom data exported from MAF search tool'. Can anyone explain this?