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8.2 years ago
sarthaks442
•
0
How can I find codon counts from a bam alignment? I am still a newbie in next-gen sequencing analysis.
How can I find codon counts from a bam alignment? I am still a newbie in next-gen sequencing analysis.
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That's not something people normally want to do. Could you describe what your actual biological goals are? That would be helpful in guiding you.
I am actually trying to analyse a codon translation rate model. I have a ribosome profiling dataset. I thought of counting using sam files by searching from a codon array. But that would take huge amount of time I think.