Question: MitoSeek to extract animal mtDNA
gravatar for mpjuers
4.6 years ago by
United States
mpjuers0 wrote:

I have whole-genome data for some Tribolium that I'm trying to pull mtDNA out of. I'm trying to get set up using MitoSeek after aligning my samples to the nuclear genome and generating .bams, but in reading the mitoSeek docs thoroughly, it seems that the authors only intend it do be used on human data, as the reference flags only allow selection from two human references. Is there a way to use this pipeline on non-human data?

mtdna • 1.0k views
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