Can I convert a .mol to a .pdb

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8.3 years ago

julius.godinez1987 • 0

I'm having trouble converting .mol to .pdb. I have .mol's of Trametinib and Dabrafenib and I wanna use the .pdb I have of MEK1 and MEK2 but when I try using BABEL to convert the .mol mMaya can't open the .pdb's I get. If anyone can help I would greatly appreciate it thanks!

Trametinib .mol Dabrafenib .pdb • 3.8k views

ADD COMMENT • link updated 21 months ago by Ram 43k • written 8.3 years ago by julius.godinez1987 • 0

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Can you explain what do you mean by "can't open the .pdb's"?

ADD REPLY • link updated 4.3 years ago by Ram 43k • written 8.3 years ago by GouthamAtla 12k

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mMaya won't open it I keep getting this message.

PDB "Dabrafenib_v3" failed to import correctly. You might try importing with different "import options" (removing bonds can often help). You may also attempt a coarse fix of the file. Many non-ProteinDataBank-derived structures have issues due to their incomplete adherence to the PDB specification. Feel free to send through feedback so we migth be able to help, preferably using the "updates / feedback" button at the bottom of the editor.

I've tried all of the options still won't open it

ADD REPLY • link updated 4.3 years ago by Ram 43k • written 8.3 years ago by julius.godinez1987 • 0

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But did you inspect the file in a text editor what is missing or what mMaya is expecting?

ADD REPLY • link updated 4.3 years ago by Ram 43k • written 8.3 years ago by GouthamAtla 12k

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