Are there any available genome data files in .AVRO format
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8.3 years ago

Are there any human genome files available for download in .AVRO format?

I'm researching conversions utilizing .AVRO, such as .AVRO > .BAM or .FASTQ but so far haven't been able to find exome or WGS data in .AVRO format to work with.

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If you refer to Apache Avro then this data serialization system requires a schema. ADAM ( https://github.com/bigdatagenomics/adam ) , for instance, uses Apache Avro and according to the documentation you can use

adam-submit transform adam/NA12878.bam adam/NA12878.adam

for BAM conversion.

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