Gene plot similar to LocusZoom
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7.0 years ago

After doing some analysis I am interested in some particular regions of the genomes and was interested to see which genes were there.

I wanted to know if there was some easy way, that would let me plot the genes in R in similar way that LocusZoom does. I tried downloading the LocusZoom source code but simply could not figure out how the gene plotting was done.

R visualization • 5.2k views
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Thanks! Have you used the Sushi package before? I'm trying to plot a simple genomic region but keep getting an error. I'm trying the plotGenes function.

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I don't get any error. I just used the example from the ?plotGenes function. What error is that?

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I downloaded a bed file from the ensembl website for my build. When I run the plotGenes function I just get a "yes" printed on the console, it never plots anything and I just have to stop it.