Question: Gene To Goslim Mapping
gravatar for Federico Giorgi
8.3 years ago by
Columbia University
Federico Giorgi590 wrote:

Dear all,

I'm using the Bioconductor package goseq for GO enrichment in RNASeq data. The package is wonderful and uses a built-in fetching function to automatically get mappings and gene length for the organism of interest. However, it's lacking a GOslim functionality. To implement a gene2goslim mapping it's possible to provide a many-to-many gene-to-goslim dataframe and perform the tests.

My question is: where is it possible to find a mapping between gene identifiers (Entrez ids would be best) and GOslim terms? Something like the mapping in the Bioconductor package org.Hs.egGO2ALLEGS. Also flat files are welcome :-)

Thank you!

gene R bioconductor • 2.1k views
ADD COMMENTlink written 8.3 years ago by Federico Giorgi590
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 879 users visited in the last hour