Question: Why can't I get classification when I use a custom TE library
gravatar for liuhui
4.9 years ago by
liuhui20 wrote:

Dear all,

Recently, I used RepeatMasker to annotate a transcriptome. In fact, I want to use a custom TE library (such as a plant TE library from to annotate my transcriptome.

But I failed to got the same classified table when I run the command 'RepeatMasker Athaliana_167_TAIR9 -lib ~/bin/censor-4.2.29/biolib/athrep.ref -pa 8' as the command 'RepeatMasker Athaliana_167_TAIR9 -species arabidopsis -pa 8' do.

So, could anyone please help me in solving this problem or give me any advice?

Thank you very much!

rna-seq tool te annotation • 1.2k views
ADD COMMENTlink modified 4.9 years ago by Istvan Albert ♦♦ 85k • written 4.9 years ago by liuhui20
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