Question: Why can't I get classification when I use a custom TE library
0
gravatar for liuhui
4.9 years ago by
liuhui20
China
liuhui20 wrote:

Dear all,

Recently, I used RepeatMasker to annotate a transcriptome. In fact, I want to use a custom TE library (such as a plant TE library from http://www.girinst.org/repbase/) to annotate my transcriptome.

But I failed to got the same classified table when I run the command 'RepeatMasker Athaliana_167_TAIR9 -lib ~/bin/censor-4.2.29/biolib/athrep.ref -pa 8' as the command 'RepeatMasker Athaliana_167_TAIR9 -species arabidopsis -pa 8' do.

So, could anyone please help me in solving this problem or give me any advice?

Thank you very much!

rna-seq tool te annotation • 1.2k views
ADD COMMENTlink modified 4.9 years ago by Istvan Albert ♦♦ 85k • written 4.9 years ago by liuhui20
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1861 users visited in the last hour