How does MITObim (or MIRA's mapping mode) call bases in the consensus?
0
0
Entering edit mode
8.2 years ago
novice ★ 1.1k

I've been reading the MITObim paper trying to find out how exactly does it call bases in the final consensus. It doesn't seem to include this information and nor does the MIRA paper. Maybe because it's expected to be known?

Here's an example of what I'm asking.

   AATCG?TTTCATG      Final contig
     TCGATTT          Reads
     TCGCTTT
     TCGCTTT
     TCGCTTT

In a situation like this, would the base in the final contig be C? Is it determined simply by majority? Is this how most consensus assemblers work?

MITObim MIRA mapping • 2.1k views
ADD COMMENT

Login before adding your answer.

Traffic: 1492 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6