Question: Select Single-copy genes
0
gravatar for mts89
5.0 years ago by
mts890
mts890 wrote:

Hi everyone,

I have a large orthologous tree file (newick format) with one tree per line. I only want the single-copy gene trees (one copy per one species). I tried to select by the ID of the species with awk command but I always modified and damaged the trees.

The simplest tree is like ("(", ID of the species 1, dot, name of the gene, ":", distance value, ID of the species 2, dot, name of the gene, ":", distance value, ")", ";" ):

(ID1_XXXX.geneXXX:0.XX,ID2_XXXX.geneXXX:0.XX); 

Any script idea to select the single-copy gene trees?

orthologous supertree • 1.1k views
ADD COMMENTlink written 5.0 years ago by mts890
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1591 users visited in the last hour
_