Forum:Metagenomics Raw dataset
2
0
Entering edit mode
7.7 years ago

Hello everyone,

I'm writing a paper on soil metagenomics, I want to analyze the samples using tools but am not sure where to get the raw data for analysis.

I also want to know how is this soil metagenomics going to help crop improvement.

Thanks all!

metagenomics • 4.8k views
ADD COMMENT
0
Entering edit mode

NCBI-SRA - Download data using SRAtoolkit.

ADD REPLY
0
Entering edit mode

Thanks for the response, but I wanna know how do I carry the workflow???

Just get the sequence, run it using RAST server??

I also want to know how to interpret this for crop improvement, this is first time am working on metagenomics and have no clue...

Pls help me.....

ADD REPLY
2
Entering edit mode

And I want to know how to implement a parallel hypergeometric summation algorithm, but I don't expect that somebody in the internet will just tell me how. Instead, I'm actually going to read some relevant scientific literature, use google, etc., and then finally ask specific questions in forums..

ADD REPLY
0
Entering edit mode
7.7 years ago
5heikki 11k

mg-rast has nearly 32k public metagenomes

ADD COMMENT
0
Entering edit mode
7.7 years ago
dago ★ 2.8k

Anyway, you can also look at the IMG portal of the JGI

ADD COMMENT

Login before adding your answer.

Traffic: 1017 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6