Question: Signaling Pathways in xml format
1
gravatar for shawin
3.3 years ago by
shawin10
United Kingdom
shawin10 wrote:

Hi, 

where i can find a HIF-1 pathway in xml format , except KEGG.  is their other data base for  HIF-1 . PPAR  pathways in xml format.I check the signaling science website but  i could not find the  pathways , please any help

gene • 789 views
ADD COMMENTlink modified 3.3 years ago by cannin250 • written 3.3 years ago by shawin10
0
gravatar for Benn
3.3 years ago by
Benn6.8k
Netherlands
Benn6.8k wrote:

Do you mean BioPAX format?

Check Reactome or wikipathways for BioPAX (owl) format.

ADD COMMENTlink written 3.3 years ago by Benn6.8k
0
gravatar for cannin
3.3 years ago by
cannin250
United States
cannin250 wrote:

Pathway Commons has a large collection of pathways in the BioPAX language which are XML-formatted. 

* http://www.pathwaycommons.org/pc2/downloads 
* Check out https://github.com/cannin/biopaxTutorial for presentations and links to tools to get you started. 

ADD COMMENTlink modified 3.3 years ago • written 3.3 years ago by cannin250
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