Freebayes variant calling: argument for min alternate total (by fraction)
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5.7 years ago
laurenvw ▴ 20

Hi all,

​I'm working on getting my SNPs filtered in Freebayes, and I was hoping to be able to set a fraction for the min alternate total (-G) rather than a set a hard number... do you know if there is any way of doing this? I know there is an option to use fractions for min alternate alleles within an individual (-F), but I can't seem to find the same type of option for within the total population. Anyone know?

Lauren

 

freebayes min alt alleles • 1.5k views
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