Question: how to setup miRDeep2 on osx 10.10 (Yosemite)
0
gravatar for khblack
4.8 years ago by
khblack0
khblack0 wrote:

 

Hello I want use miRDeep2 on my mac (Yoseimite).
So I downloaded miRDeep2 on https://www.mdc-berlin.de/8551903/en/ 

I open iterm and change dir to Download/mirdeep2
type ./install.pl

but there are error message like this :

+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Use of uninitialized value $new in pattern match (m//) at ./install.pl line 20.
making backup of .bashrc,.bash_profile and .cshrc and removing all entries of mirdeep in those files
~/.bashrc backup is ~/.bashrc_1454562646
~/.bash_profile backup is ~/.bash_profile_1454562646
file /Users/XXXX/.cshrc.bak not found

Error:
    no gcc compiler installed. Please install a gcc compiler
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++

but I already installed gcc...;;
how can I solve this problem??

mirna mirdeep2 • 1.3k views
ADD COMMENTlink modified 4.8 years ago by andrew.j.skelton736.1k • written 4.8 years ago by khblack0

Cross-posted and partially answered: http://seqanswers.com/forums/showthread.php?t=66045

ADD REPLYlink modified 4.8 years ago • written 4.8 years ago by GenoMax92k
0
gravatar for jth
4.8 years ago by
jth190
Turkey
jth190 wrote:

Hi khblack,

Assuming you installed gcc yourself, can you make sure that location of your gcc is in your PATH variable by typing "echo $PATH" in your terminal? If you see any problem you can add the location to your .bash_profile file and re-open a terminal window. 

To avoid any complications, you can always download Xcode Developer Tools (a good how-to can be found here.) as well.

ADD COMMENTlink modified 4.8 years ago • written 4.8 years ago by jth190
0
gravatar for andrew.j.skelton73
4.8 years ago by
London
andrew.j.skelton736.1k wrote:

Have you got Xcode installed and have you opened it to configure?

ADD COMMENTlink written 4.8 years ago by andrew.j.skelton736.1k
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