Entering edit mode
8.2 years ago
welkinakash5
•
0
I tried with these code for Uniprot but receved nothing inside my variable throws NullpointerException and I/O Exception each time . Please provide me the simple step by step demo if possible.
// we will tell the UniProt proxy class that we are expecting a sequence that is an amino acid
set = AminoAcidCompoundSet.getAminoAcidCompoundSet();
// now load the sequence from the UniProt website
try {
uniprotSequence = new UniprotProxySequenceReader<AminoAcidCompound>(uniProtID,set);
Log.e("Check * *", String.valueOf(uniprotSequence.getLength()));
} catch (CompoundNotFoundException e) {
e.printStackTrace();
Log.e("Check * *", "Compound Not Found Exception");
} catch (IOException e) {
e.printStackTrace();
Log.e("Check * *", "I/O Exception");
}
// and make a protein sequence out of it
ProteinSequence seq = new ProteinSequence(uniprotSequence);
// Log.e("Asynck * *",seq.toString());
Also from ncbi is not working
http://biojava.org/wiki/BioJava:CookBook:ExternalSources:NCBIFetch
Please help me to resolve this issue. do I need Buffered or Inputstream