Question: Generic probe IDs to HUGO IDs API
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gravatar for ncl.lazzarini
3.7 years ago by
United Kingdom
ncl.lazzarini90 wrote:

I'm working with microarray datasets. I usually convert the original probe ids to HUGO ids using online tools such as MadGene (http://cardioserve.nantes.inserm.fr/madtools/madgene/).

Is there any API/tool that converts any type of probe IDs (e.g affymetrix: 114_r_at, Illumina: GI_10047089-S, ILMN_1651358 etc.) into HUGO ids?

I'm aware of Biomart but you need to load the chip database upfront. I'd like something more generic and flexible.

api mapping hugo probe • 1.3k views
ADD COMMENTlink modified 3.6 years ago by Biostar ♦♦ 20 • written 3.7 years ago by ncl.lazzarini90

Not API, but you can do in bioconductor like this

ADD REPLYlink written 3.7 years ago by venu6.3k

But you need to load the specific library:

library("illuminaHumanv4.db") #Get this library if you don't have
ADD REPLYlink written 3.7 years ago by ncl.lazzarini90
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