Question: Gene expression analysis
gravatar for rakeshmbb
3.9 years ago by
rakeshmbb0 wrote:

Hi every one. I have 20 pair of genes and their expression data in terms of RPKM. I have extracted RPKM data from 15 different experiment for each gene pair. Can I do a coexpreesion study from this dataset? I just want to know  whether in each pair genes are co-expressed or not. Can I use correlation coefficient for such study. If yes then what should be the cut off? I am new to coexpression study. Please help. Thanks in advance

rna-seq • 930 views
ADD COMMENTlink written 3.9 years ago by rakeshmbb0

Correlation sounds like a good way to start, you can calculate a p-value for the correlation and thus decide the cutoff

ADD REPLYlink written 3.9 years ago by roy.granit810
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