Question: After installing the program Netoglyc
0
gravatar for schriscar
4.2 years ago by
schriscar0
schriscar0 wrote:

When I run the program I get these following error messages:

 

Netoglyc: surface prediction failed in entry "sequence name"

grep:infile.howlin: file or directory not found

gawk: ./netoglyc/bin/combine:36:fatal:impossible to open file infile.fsa for reading (File or directory not found)

 

I've already checked the patches for: echo, awk, paste, gnuplot, ppmagif and signalp and I corrected them when needed in netoglyc script.

I've checked the other scripts and changed gawk's patch to the right patch installed in my computer.

 

The netoglyc and temporary files folders where set to allow reading and writing. I tried to download again the program and redo all the settings, but I had to success.

 

Do you have any suggestions on how to solve this problem?

 

Thanks!

ADD COMMENTlink modified 12 months ago by yyyyy1110 • written 4.2 years ago by schriscar0

This is the important part: "impossible to open file infile.fsa for reading (File or directory not found)". If in doubt, always give the full path to the program, i.e. "/home/schriscar/data/infile.fasta".

The holy trinity of Linux problem solving: Paths, Permissions, Parameters (in that order)

ADD REPLYlink modified 11 weeks ago by RamRS26k • written 4.2 years ago by Daniel3.8k

Hi, have you solved this problem? I have the same question.

ADD REPLYlink written 12 months ago by yyyyy1110
0
gravatar for schriscar
4.2 years ago by
schriscar0
schriscar0 wrote:

​The file infile.fsa is generated during the script running, the folder in which the temporary files are generated has the permission for reading and writing.​ The complete patch of the test sequence was typed. I'm sending along the main script for a better understanding of the problem.

ADD COMMENTlink modified 11 weeks ago by RamRS26k • written 4.2 years ago by schriscar0
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