I am using ballgown to measure transcript abundance in my RNA-seq samples. I want to plot the transcripts of a gene using the
plotTranscript function of the ballgown package.
When I try to run:
plotTranscripts(gene='DDX11L1', gown=bg, samples='sample3_output',meas='FPKM', colorby='transcript', main='transcripts from gene DDX11L1: sample 3, FPKM')
I get this error:
Error in seq.default(min(gtrans$start), max(gtrans$end), by = 1) : 'from' cannot be NA, NaN or infinite In addition: Warning messages: 1: In min(gtrans$start) : no non-missing arguments to min; returning Inf 2: In max(gtrans$end) : no non-missing arguments to max; returning -Inf
I have no clue about what it means. Until that point everything was executed without errors/warnings.
Any help would be much appreciated.