How to apply psi-blast for to find pssm matrix for multiple protein sequences ?
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5.8 years ago
puja.patel ▴ 10

Hello,

I am working on protein sequences to find best feature for SVM. So i was right now try to work on pssm matrix feature for protein sequence. If i apply psi-blast with "nr" data base on my protein sequences it gives pssm matrix as an output.But my problem is i have 2000 protein sequences at a time i am able to find only one sequences pssm matrix out of 2000. So what can i do for to find all 2000 sequences pssm matrix. If any one have any idea please send the post and try to give the answer. Thank to all in advance.   

 

 

 

Thank you.

proteinsequences psi-blast pssm matrix • 2.0k views
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