Question: Normalization of CLIP peak by transcript level
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gravatar for Anil Kesarwani
5.0 years ago by
United States
Anil Kesarwani90 wrote:

HI,

I am using Piranha for CLIP-Seq data analysis. I was wondering how to normalize peaks by transcript  abundance (calculated as FPKM from RNA-seq). I read in several articles that normalization with transcript level could help remove spurious peaks. I therefore performed RNA-seq as well, together with CLIP-Seq for the corresponding samples. Could some body please help me out. Any response is highly appreciated.

rna-seq tool • 1.4k views
ADD COMMENTlink modified 5.0 years ago by Istvan Albert ♦♦ 86k • written 5.0 years ago by Anil Kesarwani90
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