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6.3 years ago
sfcarroll
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80
23andMe provide SNP information via their API, examples below.
# Updated: 2014-07-23 # index is a key for the /genomes/ endpoint (2 base pairs per index). # strand is always +1. index snp chromosome chromosome_position 316 rs1000219 10 54442734 317 rs1000220 4 16621729 318 rs10002203 4 186504624 319 rs1000221 15 89627396 320 rs1000222 4 140587985
When I take one of these SNP entries and cross-check against UCSC, I am getting different coordinates. For example, with hg38:
rs10002203 at chr4:185583220-185583720
How can I cross-reference 23andMe SNPs against an assembly?