Question: Phylogeny from Genotype Count data using MEGA
0
gravatar for hellbio
3.7 years ago by
hellbio370
hellbio370 wrote:

Hi,

I have genotype data in a matrix which has values from 1-5 as shown below:

    CNV1    CNV2    CNV3    CNV4

S1   2    3    2    2
S2    1    2    4    2
S3    0    2    1    2
S4    5    2    3    2
S5    1    2    2    2
 

Could someone suggest how this data can be input to MEGA or anyother phylogeny software calculate distance matrix and  construct NJ tree.

mega phylogeny • 1.2k views
ADD COMMENTlink modified 2.2 years ago by caroline.pont10 • written 3.7 years ago by hellbio370
0
gravatar for caroline.pont
2.2 years ago by
caroline.pont10 wrote:

Hi, I have exactely the same question... did you find the way to do that? (I have a .vcf format)

ADD COMMENTlink written 2.2 years ago by caroline.pont10
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