Would you please guide me. I want to use DaPars. It need a BedGraph file as input.
I have searched and understand it is possible to covert bed to bedgraph! But how the coverage could be defined then? In DaPars the coverage in needed to find if there is any alternative polyadenylation.
Two easy ways to make Bedgraph from BED input with common Unix tools are with
Thanks a lot, would you please let me know how to convert wig to BedGraph?
You can use wig2bed:
Thanks, I got this error
wig2bed: line 156: convert2bed: command not found
Install all the binaries into one place available from your path, like /usr/local/bin etc.
Of course I did it but I still face this error