Entering edit mode
8.2 years ago
kandoigaurav
▴
150
Is there a database or tool which gives the combined ontologies for every gene in a pathway?
To illustrate:
Suppose gene A and B are associated with pathway P. Gene A and B both have some ontologies associated with them, let's call them Oa1, Oa2 ,... , Oan; Ob1, Ob2, .. , Obn. Then pathway P has ontologies Oa1, Oa2 ,... , Oan, Ob1, Ob2, .. , Obn.
Sorry, can you explain it a bit more.
GO terms and pathways are 2 different things, stored in different databases.
Maybe you should check the GO.db package in R to find which genes are found in which GO terms.
Reactome or KEGG might be interesting for pathways...
Don't know if you were asking this?