Sorry if this has been answered before (though I have not found an appropriate answer already) What is an effective way to extract multiple variants from the vcf file using bed file.
I have a huge number of variants in vcf. example i have downloaded the human whole genome vcf. but i am looking for certain exons variants and i have those position in the bed file. i want to find only check those positions alone not the whole vcf. how to extract the variants using Bed file