Question: The same statistical test for all multi omics features
0
gravatar for chris86
4.1 years ago by
chris86330
United Kingdom, London
chris86330 wrote:

Hi

 

I am about to analyse a load of omic data from multiple platforms and it seems sensible for feature selection to use the same statistical test for all data types. Our response variable is continuous, but it is also discrete in another analysis. I was wondering what the best way of doing this was? I usually use limma for array and RNA-seq, but having to analyse these other data probably requires a different approach.

 

Our analysis includes flow cytometry, RNA-seq, microarray, and some proteomics.

 

Thanks,

 

Chris

sequencing rna-seq next-gen • 1.1k views
ADD COMMENTlink modified 4.1 years ago • written 4.1 years ago by chris86330

You might be interested in WGCNA.

ADD REPLYlink modified 18 months ago by RamRS26k • written 4.1 years ago by pld4.8k

Hi, I use limma in R for analysis with microarray-, RNAseq-, or proteomics (label free) data. I don't use flow data...

ADD REPLYlink written 4.1 years ago by Benn7.9k
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