Question: Samtools 1.3 mpileup result < >
0
gravatar for yanweng
3.2 years ago by
yanweng30
yanweng30 wrote:

I am using samtools(version 1.3) mpileup to get the mapping information of every position. But I cannot understand the < and > in the fourth column of the result. I would appreciate if someone can explain it here.

Here is what I get:

chr1    546478  A       1       >       E
chr1    1345545    a    4    ><<,    6EEE
ADD COMMENTlink modified 7 months ago by RamRS21k • written 3.2 years ago by yanweng30
1
gravatar for alebuenosm
3.2 years ago by
alebuenosm20
Brazil
alebuenosm20 wrote:

I think the answer was already provided in this post

ADD COMMENTlink modified 7 months ago by RamRS21k • written 3.2 years ago by alebuenosm20

You are right!

ADD REPLYlink written 3.2 years ago by yanweng30
0
gravatar for yanweng
3.2 years ago by
yanweng30
yanweng30 wrote:

Looks like they are "unseen alle". I just found some explanation online

ADD COMMENTlink modified 7 months ago by RamRS21k • written 3.2 years ago by yanweng30

Never mind. It's wrong

ADD REPLYlink written 3.2 years ago by yanweng30
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