I am working on CNV detection (ReadDepth approach) and got my final results in this format ->
CHROM START END GC% READ_DEPTH chr1 0 1000 0.551000 1345.162598 chr2 0 1000 0.478000 697.162659 chr2 1000 2000 0.431000 685.829346
and I did analysis with some different reference genome (fasta format, only chromosome names and lengths are different) not with hg18 or hg19.
I am looking for a visualization tool like this.
I do not want so complicated, just the yellow lines ( chromosome positions on x axis and read depth on y axis) So that I can easily see where readdepth is low (deletion) and where it is high (duplication).