Chromatin accessibility (Genome Build 37) and feasibility of referencing it to a Genome Build 38
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8.2 years ago

Does anyone know if there is a database with information about the Chromatin accessibility using the Assemble Hg38; right now I only know about [these listed databases].

Also, if there is not yet available a database with the build 38 if there is an argumented way to make a cross-reference between them considering the size(# bases) of the assembles are different (and other differences) and if is plausible to consider if the net chromatin accessibility shouldn't change because of just a different assembly.

Additional note: the chromatin accessibility data (build 37) doesn't have a reference to the genes accessible just a position (#)

Chromatin Accesability hg38 ENCODE gene • 1.7k views
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8.2 years ago
jotan ★ 1.3k

The UCSC lift over tool will convert between different genome builds.

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