Question: P-value problem in Plink
0
gravatar for C-man
2.8 years ago by
C-man10
C-man10 wrote:

Hi all,

I have a simple question.

I ran logistic regression with Plink,but all Odd ratios and P-value were 1

Here's a sample line I copied below.

OR    SE   L95   U95     STAT      P
1   3638    0   inf  -9.361e-17      1

If there is something wrong. Any suggestions are appreciated.

Thanks

logistic plink p-value • 876 views
ADD COMMENTlink modified 12 weeks ago by RamRS19k • written 2.8 years ago by C-man10
2
gravatar for Kevin Blighe
12 weeks ago by
Kevin Blighe33k
Republic of Ireland
Kevin Blighe33k wrote:

OR of 1 indicates neither an increased nor decreased odds of having the phenotype of interest. As this particular SNP is therefore entirely uninformative, its P value is 1.

If this was unexpected, then check your input data to ensure that everything is encoded correctly.

Kevin

ADD COMMENTlink written 12 weeks ago by Kevin Blighe33k
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