Question: Finding out if non-coding transcripts from CPAT are tissue specific?
gravatar for ApoorvaB
4.1 years ago by
United States
ApoorvaB240 wrote:

Hi Everyone,

I am working with RNA-Seq data and I am trying to find unknown lncRNA's. I used CPAT to find the coding potential of the transcripts. Is there any way to find out if any of them are tissue specific ???


lncrna rna-seq cpat • 911 views
ADD COMMENTlink modified 4.1 years ago by poisonAlien2.8k • written 4.1 years ago by ApoorvaB240
gravatar for poisonAlien
4.1 years ago by
poisonAlien2.8k wrote:

I don't think there is any way you can say if its a tissue specific linc just by looking coding potential score. Coding potential is just one criterion to filter out possible coding transcripts (maybe formed from splicing events from protein coding genes). Take a look at MiTranscriptome, maybe the linc that you have found might be there in any of the TCGA or other tissues.

ADD COMMENTlink modified 18 months ago by RamRS26k • written 4.1 years ago by poisonAlien2.8k
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